Explore projects

Scripts and notebooks for the paper: https://doi.org/10.5194/egusphere-2024-2082

Guideline for downloading Sentinel-2 images

This repository contains a Snakemake workflow tailored for assembling bacterial genomes from long-read data generated with R10.4.1 simplex reads from Oxford Nanopore Technologies and includes several QC steps on the resulting assemblies.

Tracking using multiple camera's

Cybele Demo 7#3: carcass tracking

This code repository stores the code that was used to process Genotyping-by-Sequencing data from Trichoderma asperellum.

This repository contains a Snakemake workflow tailored for assembling bacterial genomes from long-read data generated with R10.4.1 simplex reads from Oxford Nanopore Technologies and includes several QC steps on the resulting assemblies.

Illumina bacterial assembly snakemake is a snakemake pipeline to assemble lots of bacterial genomes from Illumina paired-end short-reads (typically 150bp); It also performs several QC steps on the reads and on the resulting assemblies. Everything needed can be found in this repository (except for the GTDB reference database for taxonomic assembly classification and the Kraken2 database for taxonomical read classification).