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Agroforestry / Agroforlight
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ILVO-Genomics / SMAP-package / SMAP
GNU Affero General Public License v3.0Updated -
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Tracking using multiple camera's
Cybele Demo 7#3: carcass tracking
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hydras / ert-paper
OtherScripts and notebooks for the paper: https://doi.org/10.5194/egusphere-2024-2082
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ILVO-Genomics / GBS / GBS_Fol4
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Niel Verbrigghe / alaambak
GNU General Public License v3.0 onlyUpdated -
This repository contains a Snakemake workflow tailored for assembling bacterial genomes from long-read data generated with R10.4.1 simplex reads from Oxford Nanopore Technologies and includes several QC steps on the resulting assemblies.
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Steve Baeyen / Bacterial assembly QC snakemake
MIT LicenseThis repository contains a Snakemake bacterial assembly QC pipeline to perform quality control. It will use Quast (metrics), CheckM2 (completedness and contamination), Busco (completedness), skANI (taxonomic assignment against GTDB with ANI). It will also produce a Busco plot summary, a beeswarm plot of N50 and number of contigs, and an excel file with Quast, CheckM2 and skANI summaries.
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