Illumina bacterial assembly snakemake

Project information

Illumina bacterial assembly snakemake is a snakemake pipeline to assemble lots of bacterial genomes from Illumina paired-end short-reads (typically 150bp); It also performs several QC steps on the reads and on the resulting assemblies. Everything needed can be found in this repository (except for the GTDB reference database for taxonomic assembly classification and the Kraken2 database for taxonomical read classification).

37 Commits
1 Branch
1 Tag
1 Release

README
MIT License
CHANGELOG
CONTRIBUTING

Created on

August 29, 2024

Copy SSH clone URLgit@gitlab.ilvo.be:genomics/wgs/illumina-bacterial-assembly-snakemake.git
Copy HTTPS clone URLhttps://gitlab.ilvo.be/genomics/wgs/illumina-bacterial-assembly-snakemake.git