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assembly

A reproducible Snakemake workflow for end-to-end de novo assembly and quality control of bacteriophage Illumina sequencing datasets. Starting from raw paired-end reads, the pipeline produces assembled genomes, virome classification scores, completeness estimates, terminal-repeat predictions, and a unified HTML + PDF report. A reproducible Snakemake workflow for end-to-end de novo assembly and quality control of bacteriophage Illumina sequencing datasets. Starting from raw paired-end reads, the pipeline produces assembled genomes, virome classification scores, completeness estimates, and a unified HTML + PDF report.